| Run summary data | |
| Master run log | log_20150116193701.txt |
| Previous run log | log_20150116192243.txt |
| BIOM table statistics | biom_table_summary.txt |
| Filtered BIOM table (minimum sequence count: 1114) | table_mc1114.biom.gz |
| Rarified BIOM table (sampling depth: 1114) | table_even1114.biom.gz |
| Beta diversity results (even sampling: 1114) | |
| Distance boxplots (weighted_unifrac) | SampleType_Distances.pdf |
| Distance boxplots statistics (weighted_unifrac) | SampleType_Stats.txt |
| Distance boxplots (weighted_unifrac) | DaysSinceExperimentStart_Distances.pdf |
| Distance boxplots statistics (weighted_unifrac) | DaysSinceExperimentStart_Stats.txt |
| PCoA plot (weighted_unifrac) | index.html |
| Distance matrix (weighted_unifrac) | weighted_unifrac_dm.txt |
| Principal coordinate matrix (weighted_unifrac) | weighted_unifrac_pc.txt |
| Distance boxplots (unweighted_unifrac) | SampleType_Distances.pdf |
| Distance boxplots statistics (unweighted_unifrac) | SampleType_Stats.txt |
| Distance boxplots (unweighted_unifrac) | DaysSinceExperimentStart_Distances.pdf |
| Distance boxplots statistics (unweighted_unifrac) | DaysSinceExperimentStart_Stats.txt |
| PCoA plot (unweighted_unifrac) | index.html |
| Distance matrix (unweighted_unifrac) | unweighted_unifrac_dm.txt |
| Principal coordinate matrix (unweighted_unifrac) | unweighted_unifrac_pc.txt |
| Taxonomic summary results | |
| Taxa summary bar plots | bar_charts.html |
| Taxa summary area plots | area_charts.html |
| Taxonomic summary results (by SampleType) | |
| Taxa summary bar plots | bar_charts.html |
| Taxa summary area plots | area_charts.html |
| Taxonomic summary results (by DaysSinceExperimentStart) | |
| Taxa summary bar plots | bar_charts.html |
| Taxa summary area plots | area_charts.html |
| Alpha diversity results | |
| Alpha rarefaction plots | rarefaction_plots.html |
| Alpha diversity statistics (SampleType, PD_whole_tree) | SampleType_stats.txt |
| Alpha diversity boxplots (SampleType, PD_whole_tree) | SampleType_boxplots.pdf |
| Alpha diversity statistics (DaysSinceExperimentStart, PD_whole_tree) | DaysSinceExperimentStart_stats.txt |
| Alpha diversity boxplots (DaysSinceExperimentStart, PD_whole_tree) | DaysSinceExperimentStart_boxplots.pdf |
| Alpha diversity statistics (SampleType, chao1) | SampleType_stats.txt |
| Alpha diversity boxplots (SampleType, chao1) | SampleType_boxplots.pdf |
| Alpha diversity statistics (DaysSinceExperimentStart, chao1) | DaysSinceExperimentStart_stats.txt |
| Alpha diversity boxplots (DaysSinceExperimentStart, chao1) | DaysSinceExperimentStart_boxplots.pdf |
| Alpha diversity statistics (SampleType, observed_otus) | SampleType_stats.txt |
| Alpha diversity boxplots (SampleType, observed_otus) | SampleType_boxplots.pdf |
| Alpha diversity statistics (DaysSinceExperimentStart, observed_otus) | DaysSinceExperimentStart_stats.txt |
| Alpha diversity boxplots (DaysSinceExperimentStart, observed_otus) | DaysSinceExperimentStart_boxplots.pdf |
| Group significance results | |
| Category significance (SampleType) | group_significance_SampleType.txt |
| Category significance (DaysSinceExperimentStart) | group_significance_DaysSinceExperimentStart.txt |
Need help?
You can get answers to your questions on the QIIME Forum.
See the QIIME tutorials for examples of additional analyses that can be run.
You can find documentation of the QIIME scripts in the QIIME script index.