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Run summary data
Master run log log_20150120223600.txt
BIOM table statistics biom_table_summary.txt
Filtered BIOM table (minimum sequence count: 353) table_mc353.biom.gz
Rarified BIOM table (sampling depth: 353) table_even353.biom.gz
Taxonomic summary results
Taxa summary bar plots bar_charts.html
Taxa summary area plots area_charts.html
Alpha diversity results
Alpha rarefaction plots rarefaction_plots.html
Beta diversity results (even sampling: 353)
PCoA plot (bray_curtis) index.html
Distance matrix (bray_curtis) bray_curtis_dm.txt
Principal coordinate matrix (bray_curtis) bray_curtis_pc.txt

Need help?
You can get answers to your questions on the QIIME Forum.
See the QIIME tutorials for examples of additional analyses that can be run.
You can find documentation of the QIIME scripts in the QIIME script index.