Reference genome database for Centrifuge
======

Centrifuge is a fast and memory-efficient classifier for metagenomic data.

 - Website: https://ccb.jhu.edu/software/centrifuge/
 - Citation: Kim D, Song L, Breitwieser FP, Salzberg SL. Centrifuge: rapid and
   sensitive classification of metagenomic sequences. Genome Res. 2016. 26(12):
   1721-1729.

Built using Centrifuge v1.0.4. Command:

```
centrifuge-build -p # --seed 42 --conversion-table taxid.map \
  --taxonomy-tree nodes.dmp --name-table names.dmp input.fna WoLr2
```

The default taxonomy is built-in. See: ../../taxonomy/.

Typical classification command:

```
centrifuge -p # -x WoLr1 -1 input.R1.fq -2 input.R2.fq -S output.tsv \
  --report-file report.tsv
```

This analysis requires at least 22 GB memory.