# Colin Brislawn ran these scripts on 
# 2016-08-22 using the biom table 'emp_cr_gg_13_8.biom'
# from directory 'emp/latest/otu_tables/unfiltered_tables'

normalize_by_copy_number.py -i emp_cr_gg_13_8.biom -o emp_cr_gg_13_8.normalized.biom 

predict_metagenomes.py -i emp_cr_gg_13_8.normalized.biom \
-o ko_predictions.biom -a nsti_per_sample_ko.tab

predict_metagenomes.py -i emp_cr_gg_13_8.normalized.biom -t cog \
-o cog_predictions.biom -a nsti_per_sample_cog.tab

predict_metagenomes.py -i emp_cr_gg_13_8.normalized.biom -t rfam \
-o rfam_predictions.biom -a nsti_per_sample_rfam.tab